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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Orc2
wikigenes
PDBj
CellType: 0-24h embryos
ATCC
MeSH
RIKEN BRC
SRX050598
GSM694124: 24h Embryo Orc ChIP-Seq extraction1 seq1 aliquote 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Orc2
Cell type
Cell type Class
Embryo
Cell type
0-24h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
24h Embryo Orc ChIP-Seq extraction1_seq1 channel_1
developmental stage
Mixed Embryos 0-24h
Sequenced DNA Library
library_name
GSM694124: 24h Embryo Orc ChIP-Seq extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
3973515
Reads aligned (%)
95.0
Duplicates removed (%)
4.3
Number of peaks
1270 (qval < 1E-05)
dm3
Number of total reads
3973515
Reads aligned (%)
95.5
Duplicates removed (%)
2.5
Number of peaks
988 (qval < 1E-05)
Base call quality data from
DBCLS SRA