SRX050591
GSM697001: Oct4 control

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells, control ChIP-seq
antibody
none
cell line
H1
cell type
embryonic stem cell
passages
28

Sequenced DNA Library

library_name
GSM697001: Oct4 control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16151778
Reads aligned (%)
90.6
Duplicates removed (%)
1.5
Number of peaks
446 (qval < 1E-05)

hg19

Number of total reads
16151778
Reads aligned (%)
90.0
Duplicates removed (%)
2.1
Number of peaks
673 (qval < 1E-05)

Base call quality data from DBCLS SRA