SRX047150
GSM687291: WCE-TCP-48 ChipSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 ES cells
chip antibody
None
cell type
Embryonic stem cells
duration of treatment
48 hr
drug
TCP

Sequenced DNA Library

library_name
GSM687291: WCE-TCP-48_ChipSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22588783
Reads aligned (%)
85.3
Duplicates removed (%)
34.1
Number of peaks
47117 (qval < 1E-05)

mm9

Number of total reads
22588783
Reads aligned (%)
84.8
Duplicates removed (%)
34.1
Number of peaks
47198 (qval < 1E-05)

Base call quality data from DBCLS SRA