SRX047149
GSM687290: WCE-DMSO-t48 ChipSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 ES cells
chip antibody
None
cell type
Embryonic stem cells
duration of treatment
48 hr
drug
dox

Sequenced DNA Library

library_name
GSM687290: WCE-DMSO-t48_ChipSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25753669
Reads aligned (%)
81.7
Duplicates removed (%)
32.2
Number of peaks
27817 (qval < 1E-05)

mm9

Number of total reads
25753669
Reads aligned (%)
81.3
Duplicates removed (%)
32.3
Number of peaks
27939 (qval < 1E-05)

Base call quality data from DBCLS SRA