SRX047084
GSM686946: LNCaP-MED12-dht-siFoxA1-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED12

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate cancer cell line (LNCaP)
cell line
LNCaP
sirna transfection
siFoxA1 (M-010319)
agent
DHT
chip antibody
MED12
chip antibody vendor
Bethyl
transgenes
none

Sequenced DNA Library

library_name
GSM686946: LNCaP-MED12-dht-siFoxA1-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24893460
Reads aligned (%)
21.2
Duplicates removed (%)
2.4
Number of peaks
129 (qval < 1E-05)

hg19

Number of total reads
24893460
Reads aligned (%)
21.0
Duplicates removed (%)
2.7
Number of peaks
128 (qval < 1E-05)

Base call quality data from DBCLS SRA