Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate cancer cell line (LNCaP)
cell line
LNCaP
sirna transfection
siCTRL (1027280)
agent
DHT
chip antibody
H3K4me3
chip antibody vendor
Upstate
transgenes
none

Sequenced DNA Library

library_name
GSM686935: LNCaP-H3K4me3-dht-siCTRL-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
18831506
Reads aligned (%)
95.2
Duplicates removed (%)
17.0
Number of peaks
24392 (qval < 1E-05)

hg19

Number of total reads
18831506
Reads aligned (%)
94.9
Duplicates removed (%)
17.5
Number of peaks
24352 (qval < 1E-05)

Base call quality data from DBCLS SRA