Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells
cell line
THP-1
treatment
1α,25(OH)2D3
antibody
VDR

Sequenced DNA Library

library_name
GSM678269: VDR ChIP-seq calcitriol
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
37765543
Reads aligned (%)
42.6
Duplicates removed (%)
46.7
Number of peaks
1008 (qval < 1E-05)

hg38

Number of total reads
37765543
Reads aligned (%)
44.3
Duplicates removed (%)
45.5
Number of peaks
883 (qval < 1E-05)

Base call quality data from DBCLS SRA