Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
lin-39
Cell type Class
Larvae
Cell type
L3

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_LIN-39-GFP_L3_rep2 extraction2_seq1 channel_1
strain
OP18(made_by : R. Waterston and S. Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The LIN-39::EGFP fusion protein is expressed in the correct lin-39 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the LIN-39 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs18 [unc-119(+) lin-39::TY1::EGFP::3xFLAG] official name : OP18 )
developmental stage
L3
genotype
unc-119(ed3) III; wgIs18 [unc-119(+) lin-39::TY1::EGFP::3xFLAG]
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM677617: Snyder_LIN-39-GFP_L3_rep2 extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
28993063
Reads aligned (%)
4.1
Duplicates removed (%)
2.9
Number of peaks
100 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA