Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
skn-1

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 channel_2
strain
OP178(made_by : S Kim tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs178(skn-1::TY1 EGFP FLAG; unc119) official name : WBGene00004804 )
developmental stage
fed L1
genotype
unc119(ed3);wgIs178(skn-1::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM677694: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
4416551
Reads aligned (%)
69.4
Duplicates removed (%)
26.6
Number of peaks
3259 (qval < 1E-05)

ce10

Number of total reads
4416551
Reads aligned (%)
69.4
Duplicates removed (%)
26.6
Number of peaks
3261 (qval < 1E-05)

Base call quality data from DBCLS SRA