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For ce11
BigWig
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For ce10
BigWig
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Peak-call (q < 1E-10)
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For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: skn-1
wikigenes
PDBj
CellType: L1
ATCC
MeSH
RIKEN BRC
SRX044014
GSM677694: Snyder SKN-1 GFP L1 rep2 extraction2 seq1 aliquote 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
skn-1
Cell type
Cell type Class
Larvae
Cell type
L1
NA
NA
Attributes by original data submitter
Sample
source_name
Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 channel_2
strain
OP178(made_by : S Kim tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3); wgIs178(skn-1::TY1 EGFP FLAG; unc119) official name : WBGene00004804 )
developmental stage
fed L1
genotype
unc119(ed3);wgIs178(skn-1::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite
Sequenced DNA Library
library_name
GSM677694: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
4416551
Reads aligned (%)
69.4
Duplicates removed (%)
26.6
Number of peaks
3259 (qval < 1E-05)
ce10
Number of total reads
4416551
Reads aligned (%)
69.4
Duplicates removed (%)
26.6
Number of peaks
3261 (qval < 1E-05)
Base call quality data from
DBCLS SRA