Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
skn-1
Cell type Class
Larvae
Cell type
L1

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 channel_2
strain
OP178(made_by : S Kim tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3);wgIs178(skn-1::TY1 EGFP FLAG;unc119) official name : WBGene00004804 )
developmental stage
fed L1
genotype
unc119(ed3);wgIs178(skn-1::TY1 EGFP FLAG;unc119)
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM677694: Snyder_SKN-1_GFP_L1_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
4416551
Reads aligned (%)
69.4
Duplicates removed (%)
26.6
Number of peaks
3261 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA