Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
elt-3

Cell type

Cell type Class
Larvae
Cell type
L1
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_ELT-3_GFP_L1_rep2 extraction2_seq1 channel_2
strain
OP75(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The ELT-3::EGFP fusion protein is expressed in the correct elt-3 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ELT-3 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119 (ed3) III; wgIs75 [elt-3::TY1::EGFP::FLAG; unc-119 (+)] official name : OP75 )
developmental stage
fed L1
genotype
unc-119 (ed3) III; wgIs75 [elt-3::TY1::EGFP::FLAG; unc-119 (+)]
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM677682: Snyder_ELT-3_GFP_L1_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
4377247
Reads aligned (%)
87.5
Duplicates removed (%)
6.8
Number of peaks
3036 (qval < 1E-05)

ce10

Number of total reads
4377247
Reads aligned (%)
87.5
Duplicates removed (%)
6.8
Number of peaks
3052 (qval < 1E-05)

Base call quality data from DBCLS SRA