Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
lin-13
Cell type Class
Embryo
Cell type
Embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_LIN-13_GFP_emb_rep1 extraction1_seq1 channel_1
strain
OP51(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The LIN-13::EGFP fusion protein is expressed in the correct LIN-13 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the LIN-13 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119 (ed3) III; wgIs73 [lin-13::TY1::EGFP::FLAG; unc-119 (+)] official name : OP51 )
developmental stage
embryo
genotype
unc-119 (ed3) III; wgIs73 [lin-13::TY1::EGFP::FLAG; unc-119 (+)]
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM677675: Snyder_LIN-13_GFP_emb_rep1 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
5161232
Reads aligned (%)
65.6
Duplicates removed (%)
8.4
Number of peaks
214 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA