Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
mep-1

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 channel_2
strain
OP70(made_by : R Waterston tags : GFP::3xFlag mutagen : Bombard genotype : unc119(ed3); wgIs70(mep-1::TY1 EGFP FLAG C; unc119) official name : WBGene00003218 )
developmental stage
embryo
genotype
unc119(ed3);wgIs70(mep-1::TY1 EGFP FLAG C;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM677662: Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce10

Number of total reads
4849260
Reads aligned (%)
57.2
Duplicates removed (%)
20.6
Number of peaks
2500 (qval < 1E-05)

ce11

Number of total reads
4849260
Reads aligned (%)
57.2
Duplicates removed (%)
20.6
Number of peaks
2527 (qval < 1E-05)

Base call quality data from DBCLS SRA