Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: mep-1
wikigenes
PDBj
CellType: Embryos
ATCC
MeSH
RIKEN BRC
SRX043981
GSM677661: Snyder MEP-1 GFP emb rep2 extraction2 seq1 aliquote 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
mep-1
Cell type
Cell type Class
Embryo
Cell type
Embryos
NA
NA
Attributes by original data submitter
Sample
source_name
Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 channel_1
strain
OP70(made_by : R Waterston tags : GFP::3xFlag mutagen : Bombard genotype : unc119(ed3); wgIs70(mep-1::TY1 EGFP FLAG C; unc119) official name : WBGene00003218 )
developmental stage
embryo
genotype
unc119(ed3);wgIs70(mep-1::TY1 EGFP FLAG C;unc119)
Sex
hermaphrodite
Sequenced DNA Library
library_name
GSM677661: Snyder_MEP-1_GFP_emb_rep2 extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce10
Number of total reads
4793412
Reads aligned (%)
77.7
Duplicates removed (%)
6.4
Number of peaks
200 (qval < 1E-05)
ce11
Number of total reads
4793412
Reads aligned (%)
77.7
Duplicates removed (%)
6.4
Number of peaks
197 (qval < 1E-05)
Base call quality data from
DBCLS SRA