SRX043980
GSM677660: Snyder MEP-1 GFP emb rep1 extraction1 seq1 aliquote 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
mep-1

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_MEP-1_GFP_emb_rep1 extraction1_seq1 channel_2
strain
OP70(made_by : R Waterston tags : GFP::3xFlag mutagen : Bombard genotype : unc119(ed3); wgIs70(mep-1::TY1 EGFP FLAG C; unc119) official name : WBGene00003218 )
developmental stage
embryo
genotype
unc119(ed3);wgIs70(mep-1::TY1 EGFP FLAG C;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM677660: Snyder_MEP-1_GFP_emb_rep1 extraction1_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

ce10

Number of total reads
2422483
Reads aligned (%)
28.0
Duplicates removed (%)
5.9
Number of peaks
301 (qval < 1E-05)

ce11

Number of total reads
2422483
Reads aligned (%)
28.0
Duplicates removed (%)
5.9
Number of peaks
307 (qval < 1E-05)

Base call quality data from DBCLS SRA