Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
pha-4
Cell type Class
Embryo
Cell type
Late embryo

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_PHA4_GFP_lemb_rep2 extraction2_seq1 channel_2
strain
OP37(made_by : R. Waterston and S. Kim description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The PHA-4::EGFP fusion protein is expressed in the correct pha-4 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the PHA-4 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG] official name : OP37 )
developmental stage
late embryo
genotype
unc-119(ed3) III; wgIs37 [unc-119(+) pha-4::TY1::EGFP::3xFLAG]
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM677658: Snyder_PHA4_GFP_lemb_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
4078616
Reads aligned (%)
74.2
Duplicates removed (%)
4.7
Number of peaks
210 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA