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Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: Late embryo
ATCC
MeSH
RIKEN BRC
SRX043867
GSM677627: Snyder N2 POLII lemb rep1 extraction1 seq1 aliquote 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Embryo
Cell type
Late embryo
NA
NA
Attributes by original data submitter
Sample
source_name
Snyder_N2_POLII_lemb_rep1 extraction1_seq1 channel_1
strain
N2(genotype : wild type genotype : DR subclone of DB original (Tc1 pattern I) official name : N2 )
developmental stage
late embryo 20dC 4.5 hrs post-early embryo
genotype
wild type
Sex
hermaphrodite
Sequenced DNA Library
library_name
GSM677627: Snyder_N2_POLII_lemb_rep1 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
2762967
Reads aligned (%)
75.1
Duplicates removed (%)
5.1
Number of peaks
134 (qval < 1E-05)
ce10
Number of total reads
2762967
Reads aligned (%)
75.1
Duplicates removed (%)
5.1
Number of peaks
133 (qval < 1E-05)
Base call quality data from
DBCLS SRA