Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
hlh-1
Cell type Class
Embryo
Cell type
Embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_HLH-1_GFP_emb_rep2 extraction2_seq1 channel_2
strain
OP64(made_by : R. Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The HLH-1::EGFP fusion protein is expressed in the correct hlh-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the HLH-1 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc-119(ed3) III; wgIs64 [unc-119(+) hlh-1::TY1::EGFP::3xFLAG] official name : OP64 )
developmental stage
embryo
genotype
unc-119(ed3) III; wgIs64 [unc-119(+) hlh-1::TY1::EGFP::3xFLAG]
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM677614: Snyder_HLH-1_GFP_emb_rep2 extraction2_seq1 aliquote 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
7132310
Reads aligned (%)
45.3
Duplicates removed (%)
38.9
Number of peaks
2799 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA