Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
MCF-7/LTED cells
cell type
MCF-7
chip antibody
Mouse-anti-ER*
vendor
Neomarkers, clone Ab-10 (TE111.5D11)
chip antibody
Rabbit-anti-ER*

Sequenced DNA Library

library_name
GSM675073: MCF-7,LTED_ER-ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
32479576
Reads aligned (%)
89.5
Duplicates removed (%)
8.0
Number of peaks
1294 (qval < 1E-05)

hg38

Number of total reads
32479576
Reads aligned (%)
93.3
Duplicates removed (%)
5.3
Number of peaks
1088 (qval < 1E-05)

Base call quality data from DBCLS SRA