Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Ctcf ChIP DNA from Mature B cells
strain
C57BL/6J
cell type
Mature B cell
genotype
wt
antibody
CTCF
antibody vendor
Milipore

Sequenced DNA Library

library_name
GSM672402: Mature B cell CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
19600955
Reads aligned (%)
89.7
Duplicates removed (%)
37.8
Number of peaks
23807 (qval < 1E-05)

mm9

Number of total reads
19600955
Reads aligned (%)
89.5
Duplicates removed (%)
38.8
Number of peaks
23741 (qval < 1E-05)

Base call quality data from DBCLS SRA