Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Ctcf ChIP DNA from Pro-B cell Rag2-/- cells
strain
C57BL/6J
cell type
Pro-B cell
genotype
Rag2-/-
antibody
CTCF
antibody vendor
Milipore

Sequenced DNA Library

library_name
GSM672401: Pro-B cell Rag2-/- CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
19892203
Reads aligned (%)
93.4
Duplicates removed (%)
40.7
Number of peaks
33566 (qval < 1E-05)

mm9

Number of total reads
19892203
Reads aligned (%)
93.3
Duplicates removed (%)
41.6
Number of peaks
33511 (qval < 1E-05)

Base call quality data from DBCLS SRA