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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ctcf
wikigenes
PDBj
CellType: Pro-B cells
ATCC
MeSH
RIKEN BRC
SRX041879
GSM672401: Pro-B cell Rag2-/- CTCF
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ctcf
Cell type
Cell type Class
Blood
Cell type
Pro-B cells
NA
NA
Attributes by original data submitter
Sample
source_name
Ctcf ChIP DNA from Pro-B cell Rag2-/- cells
strain
C57BL/6J
cell type
Pro-B cell
genotype
Rag2-/-
antibody
CTCF
antibody vendor
Milipore
Sequenced DNA Library
library_name
GSM672401: Pro-B cell Rag2-/- CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
19892203
Reads aligned (%)
93.4
Duplicates removed (%)
40.7
Number of peaks
33566 (qval < 1E-05)
mm9
Number of total reads
19892203
Reads aligned (%)
93.3
Duplicates removed (%)
41.6
Number of peaks
33511 (qval < 1E-05)
Base call quality data from
DBCLS SRA