SRX041878
GSM672400: DP T cell wt CTCF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Ctcf ChIP DNA from DP T wt cells
strain
C57BL/6J
cell type
DP T cell
genotype
wt
antibody
CTCF
antibody vendor
Milipore

Sequenced DNA Library

library_name
GSM672400: DP T cell wt CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18775064
Reads aligned (%)
91.9
Duplicates removed (%)
67.4
Number of peaks
12775 (qval < 1E-05)

mm9

Number of total reads
18775064
Reads aligned (%)
91.8
Duplicates removed (%)
68.5
Number of peaks
12726 (qval < 1E-05)

Base call quality data from DBCLS SRA