SRX041041
ChIP-Seq analysis of H3K9me3 in human Cultured CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

DONOR_HEALTH_STATUS
NA
MOLECULE
genomic DNA
DISEASE
none
MARKERS
CD34+
PASSAGE_IF_EXPANDED
short term
CELL_TYPE
cultured CD34
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell
DONOR_ID
123
BIOMATERIAL_PROVIDER
FHCRC
DONOR_AGE
NA
sample_term_id
CL_0001059

Sequenced DNA Library

library_name
Lib:RI:20101012:03--ChIP:MA:20100927:03:CD34 expanded:H3K9Me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30680980
Reads aligned (%)
88.9
Duplicates removed (%)
10.3
Number of peaks
2048 (qval < 1E-05)

hg19

Number of total reads
30680980
Reads aligned (%)
86.9
Duplicates removed (%)
15.0
Number of peaks
1792 (qval < 1E-05)

Base call quality data from DBCLS SRA