SRX040992
ChIP-Seq analysis of H3K27me3 in human Mobilized CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

DONOR_HEALTH_STATUS
NA
MOLECULE
genomic DNA
DISEASE
none
MARKERS
CD34+
PASSAGE_IF_EXPANDED
NA
CELL_TYPE
Mobilized CD34
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell
DONOR_ID
UW RO 01480
BIOMATERIAL_PROVIDER
UW
DONOR_AGE
NA
sample_term_id
CL_0000837

Sequenced DNA Library

library_name
Lib:RI:20100308:09--ChIP:MA:20100216:09:Mobilized CD34:H3K27Me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24683312
Reads aligned (%)
95.7
Duplicates removed (%)
4.2
Number of peaks
327 (qval < 1E-05)

hg19

Number of total reads
24683312
Reads aligned (%)
95.0
Duplicates removed (%)
5.4
Number of peaks
387 (qval < 1E-05)

Base call quality data from DBCLS SRA