SRX040611
GSM668382: trik4 r2 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA

Attributes by original data submitter

Sample

source_name
wing imaginal discs, LID RNAi knock-down, H3K4me3 ChIP
genotype
LID RNAi
developmental stage
third instar larvae
tissue
wing imaginal discs
chip antibody
H3K4me3
antibody vendor
Abcam
antibody catalog number
ab8580
sequencing_date
Apr_2010

Sequenced DNA Library

library_name
GSM668382: trik4_r2_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
12133630
Reads aligned (%)
94.9
Duplicates removed (%)
55.3
Number of peaks
7313 (qval < 1E-05)

dm3

Number of total reads
12133630
Reads aligned (%)
95.0
Duplicates removed (%)
54.9
Number of peaks
7661 (qval < 1E-05)

Base call quality data from DBCLS SRA