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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: Imaginal wing disc
ATCC
MeSH
RIKEN BRC
SRX040609
GSM668380: trik4 wt rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA
Attributes by original data submitter
Sample
source_name
wing imaginal discs, wild type, H3K4me3 ChIP
genotype
wild type
developmental stage
third instar larvae
tissue
wing imaginal discs
chip antibody
H3K4me3
antibody vendor
Abcam
antibody catalog number
ab8580
sequencing_date
Apr_2010
Sequenced DNA Library
library_name
GSM668380: trik4_wt_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
15781499
Reads aligned (%)
94.3
Duplicates removed (%)
53.5
Number of peaks
7641 (qval < 1E-05)
dm3
Number of total reads
15781499
Reads aligned (%)
94.4
Duplicates removed (%)
53.0
Number of peaks
8023 (qval < 1E-05)
Base call quality data from
DBCLS SRA