SRX040413
Chromatin accessibility assay of CD3+ Primary cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD3+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
CD3 Primary Cells
MARKERS
CD3+
DONOR_ID
RO 01679
DONOR_AGE
year 21
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000084

Sequenced DNA Library

library_name
DS17198
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28395486
Reads aligned (%)
90.5
Duplicates removed (%)
19.1
Number of peaks
48936 (qval < 1E-05)

hg19

Number of total reads
28395486
Reads aligned (%)
89.8
Duplicates removed (%)
20.6
Number of peaks
48802 (qval < 1E-05)

Base call quality data from DBCLS SRA