SRX040405
Chromatin accessibility assay of Fetal Kidney Left Tissue

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Kidney, Left
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23604
DONOR_AGE
day 110
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0004538

Sequenced DNA Library

library_name
DS16579
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40334890
Reads aligned (%)
98.5
Duplicates removed (%)
8.0
Number of peaks
47687 (qval < 1E-05)

hg19

Number of total reads
40334890
Reads aligned (%)
98.0
Duplicates removed (%)
8.9
Number of peaks
47439 (qval < 1E-05)

Base call quality data from DBCLS SRA