SRX040397
Chromatin accessibility assay of Fetal Kidney Right Tissue

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Kidney, Right
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23589
DONOR_AGE
day 147
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0004539

Sequenced DNA Library

library_name
DS16441
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45285579
Reads aligned (%)
97.9
Duplicates removed (%)
9.7
Number of peaks
52994 (qval < 1E-05)

hg19

Number of total reads
45285579
Reads aligned (%)
97.4
Duplicates removed (%)
10.6
Number of peaks
52731 (qval < 1E-05)

Base call quality data from DBCLS SRA