SRX040396
Chromatin accessibility assay of Moblized CD56+ Primary cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD56+
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
FHCRC HEIMFELD
BIOMATERIAL_TYPE
Primary Cell
CELL_TYPE
Mobilized CD56 Primary Cells
MARKERS
CD56+
DONOR_ID
RO 01689
DONOR_AGE
year 34
DONOR_HEALTH_STATUS
NA
DONOR_SEX
female
DONOR_ETHNICITY
Caucasian
PASSAGE_IF_EXPANDED
NA
sample_term_id
CL_0000623

Sequenced DNA Library

library_name
DS16376
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42278118
Reads aligned (%)
98.9
Duplicates removed (%)
10.2
Number of peaks
35652 (qval < 1E-05)

hg19

Number of total reads
42278118
Reads aligned (%)
97.8
Duplicates removed (%)
13.0
Number of peaks
35540 (qval < 1E-05)

Base call quality data from DBCLS SRA