Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Adrenal Glands
MeSH Description
A pair of glands located at the cranial pole of each of the two KIDNEYS. Each adrenal gland is composed of two distinct endocrine tissues with separate embryonic origins, the ADRENAL CORTEX producing STEROIDS and the ADRENAL MEDULLA producing NEUROTRANSMITTERS.

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Adrenal Gland
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-23327
DONOR_AGE
day 85
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0002369

Sequenced DNA Library

library_name
DS15123
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
40931658
Reads aligned (%)
96.3
Duplicates removed (%)
8.3
Number of peaks
45145 (qval < 1E-05)

hg19

Number of total reads
40931658
Reads aligned (%)
95.7
Duplicates removed (%)
9.6
Number of peaks
44945 (qval < 1E-05)

Base call quality data from DBCLS SRA