SRX039655
GSM585299: Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Negative control- input DNA, no immunoprecipitation
strain
BALB/c
cell type
CD4+ T helper cells, pooled
passages
--
chip antibody
None

Sequenced DNA Library

library_name
GSM585299: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7262786
Reads aligned (%)
70.1
Duplicates removed (%)
11.0
Number of peaks
1919 (qval < 1E-05)

mm9

Number of total reads
7262786
Reads aligned (%)
70.0
Duplicates removed (%)
11.3
Number of peaks
1907 (qval < 1E-05)

Base call quality data from DBCLS SRA