Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smarca4

Cell type

Cell type Class
Blood
Cell type
Th2 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete the INTERLEUKINS IL-4; IL-5; IL-6; and IL-10. These cytokines influence B-cell development and antibody production as well as augmenting humoral responses.

Attributes by original data submitter

Sample

source_name
Chromatin IP against BRG1, resting Th2
strain
BALB/c
cell type
resting Th2 CD4+ T helper cells
passages
differentiated in culture, single round, from Naïve cells
chip antibody
BRG (J1 antibody described in Genes Dev. 1996 Sep 1;10(17):2117-30, PubMed ID: 8804307)

Sequenced DNA Library

library_name
GSM585295: uTh2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
8097240
Reads aligned (%)
32.9
Duplicates removed (%)
34.8
Number of peaks
3212 (qval < 1E-05)

mm9

Number of total reads
8097240
Reads aligned (%)
32.9
Duplicates removed (%)
35.2
Number of peaks
3211 (qval < 1E-05)

Base call quality data from DBCLS SRA