SRX039351
GSM659803: IgG exp1 no KD

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse ES cells
treatment
wild-type
antibody manufacturer
custom
antibody
Rabbit IgG
strain
E14Tg2A
cell type
mouse ES cells
knockdown
none
antibody manufacturer
custom

Sequenced DNA Library

library_name
GSM659803: IgG_exp1 no KD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34848365
Reads aligned (%)
84.4
Duplicates removed (%)
30.4
Number of peaks
965 (qval < 1E-05)

mm9

Number of total reads
34848365
Reads aligned (%)
84.3
Duplicates removed (%)
30.6
Number of peaks
1027 (qval < 1E-05)

Base call quality data from DBCLS SRA