Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell type
T47D breast cancer cells, non-treated
chip antibody
FOXA1 - Cat# AB4124, Chemicon

Sequenced DNA Library

library_name
GSM659796: FOXA1 sequencing in non-treated (DMSO as vehicle) T47D cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18082551
Reads aligned (%)
91.4
Duplicates removed (%)
6.0
Number of peaks
20778 (qval < 1E-05)

hg38

Number of total reads
18082551
Reads aligned (%)
92.8
Duplicates removed (%)
5.2
Number of peaks
20607 (qval < 1E-05)

Base call quality data from DBCLS SRA