Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUN

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell type
MCF-7 breast cancer cells, non-treated
chip antibody
cJun - Cat# sc-45, Santa Cruz

Sequenced DNA Library

library_name
GSM659792: cJun sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18074227
Reads aligned (%)
90.1
Duplicates removed (%)
5.6
Number of peaks
725 (qval < 1E-05)

hg38

Number of total reads
18074227
Reads aligned (%)
92.3
Duplicates removed (%)
4.2
Number of peaks
423 (qval < 1E-05)

Base call quality data from DBCLS SRA