Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOS

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell type
MCF-7 breast cancer cells, non-treated
chip antibody
cFos - Cat# sc-7202, Santa Cruz

Sequenced DNA Library

library_name
GSM659790: cFos sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18991389
Reads aligned (%)
89.8
Duplicates removed (%)
4.5
Number of peaks
787 (qval < 1E-05)

hg38

Number of total reads
18991389
Reads aligned (%)
91.9
Duplicates removed (%)
3.2
Number of peaks
323 (qval < 1E-05)

Base call quality data from DBCLS SRA