SRX039139
GSM659789: cFos sequencing in estradiol (E2) treated MCF-7 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOS

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell type
MCF-7 breast cancer cells, E2 treated
chip antibody
cFos - Cat# sc-7202, Santa Cruz

Sequenced DNA Library

library_name
GSM659789: cFos sequencing in estradiol (E2) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22464712
Reads aligned (%)
96.7
Duplicates removed (%)
4.0
Number of peaks
3503 (qval < 1E-05)

hg19

Number of total reads
22464712
Reads aligned (%)
95.8
Duplicates removed (%)
5.7
Number of peaks
3696 (qval < 1E-05)

Base call quality data from DBCLS SRA