Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell type
MCF-7 breast cancer cells, non-treated
chip antibody
FOXA1 - Cat# AB4124, Chemicon

Sequenced DNA Library

library_name
GSM659788: FOXA1 sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
24735220
Reads aligned (%)
85.9
Duplicates removed (%)
7.7
Number of peaks
2969 (qval < 1E-05)

hg38

Number of total reads
24735220
Reads aligned (%)
88.0
Duplicates removed (%)
6.2
Number of peaks
2695 (qval < 1E-05)

Base call quality data from DBCLS SRA