Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell type
MCF-7 breast cancer cells, E2 treated
chip antibody
FOXA1 - Cat# AB4124, Chemicon

Sequenced DNA Library

library_name
GSM659787: FOXA1 sequencing in estradiol (E2) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
17235643
Reads aligned (%)
87.1
Duplicates removed (%)
6.1
Number of peaks
6543 (qval < 1E-05)

hg38

Number of total reads
17235643
Reads aligned (%)
88.7
Duplicates removed (%)
5.1
Number of peaks
6297 (qval < 1E-05)

Base call quality data from DBCLS SRA