SRX039036
GSM656527: H4K20me3 ChIP-Seq in mES cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells, H4K20me3 ChIP
strain
C57BL/6-129
cell type
V6.5 embryonic stem cells
chip antibody
H4K20me3
antibody vendor
Abcam
antibody catalog number
AB9053
antibody lot number
361931

Sequenced DNA Library

library_name
GSM656527: H4K20me3 ChIP-Seq in mES cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14325746
Reads aligned (%)
83.0
Duplicates removed (%)
4.4
Number of peaks
5109 (qval < 1E-05)

mm9

Number of total reads
14325746
Reads aligned (%)
82.8
Duplicates removed (%)
4.6
Number of peaks
4849 (qval < 1E-05)

Base call quality data from DBCLS SRA