Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IKZF1

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

source_name
Hematopoietic Stem & Progenitor Cells, Ikaros ChIP
chip antibody
IKZF1
antibody vendor
Santa Cruz
antibody catalog number
SC-9859X
antibody lot number
K2305
cell type
CD133+ expanded umbilical cord blood (UCB) cells
cell number
3 million
biological replicate
1

Sequenced DNA Library

library_name
GSM638312: Ikaros ChIP-seq in HSPC, run 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
8897724
Reads aligned (%)
34.0
Duplicates removed (%)
22.5
Number of peaks
193 (qval < 1E-05)

hg38

Number of total reads
8897724
Reads aligned (%)
34.7
Duplicates removed (%)
21.6
Number of peaks
180 (qval < 1E-05)

Base call quality data from DBCLS SRA