SRX038742
GSM588571: H3K4me3 sequencing in non-treated (DMSO as vehicle) MCF-7 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7
cell type
breast cancer cells
agent
DMSO
chip antibody
H3K4me3
antibody catalog number
ab8580
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM588571: H3K4me3 sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
59890060
Reads aligned (%)
45.2
Duplicates removed (%)
16.5
Number of peaks
26316 (qval < 1E-05)

hg19

Number of total reads
59890060
Reads aligned (%)
44.7
Duplicates removed (%)
17.7
Number of peaks
27196 (qval < 1E-05)

Base call quality data from DBCLS SRA