SRX038741
GSM588570: H3K4me3 sequencing in estradiol (E2) treated MCF-7 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7
cell type
breast cancer cells
agent
E2
chip antibody
H3K4me3
antibody catalog number
ab8580
antibody manufacturer
Abcam

Sequenced DNA Library

library_name
GSM588570: H3K4me3 sequencing in estradiol (E2) treated MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66641401
Reads aligned (%)
48.5
Duplicates removed (%)
17.6
Number of peaks
36215 (qval < 1E-05)

hg19

Number of total reads
66641401
Reads aligned (%)
48.0
Duplicates removed (%)
18.8
Number of peaks
37536 (qval < 1E-05)

Base call quality data from DBCLS SRA