Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast cancer cells
cell line
MCF-7
cell type
breast cancer cells
agent
DMSO
chip antibody
none

Sequenced DNA Library

library_name
GSM588563: FAIRE sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
10317128
Reads aligned (%)
82.5
Duplicates removed (%)
10.1
Number of peaks
1845 (qval < 1E-05)

hg19

Number of total reads
10317128
Reads aligned (%)
81.8
Duplicates removed (%)
10.6
Number of peaks
2041 (qval < 1E-05)

Base call quality data from DBCLS SRA