Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NHLF
Tissue
lung
Lineage
endoderm
Description
lung fibroblasts

Attributes by original data submitter

Sample

source_name
cultured NHLF cells
chip antibody
none
cell line
NHLF
sample type
WCE

Sequenced DNA Library

library_name
GSM646493: NHLF_WCE_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
11202511
Reads aligned (%)
92.2
Duplicates removed (%)
3.3
Number of peaks
389 (qval < 1E-05)

hg19

Number of total reads
11202511
Reads aligned (%)
91.4
Duplicates removed (%)
4.4
Number of peaks
607 (qval < 1E-05)

Base call quality data from DBCLS SRA