Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
NHLF
Tissue
lung
Lineage
endoderm
Description
lung fibroblasts

Attributes by original data submitter

Sample

source_name
cultured NHLF cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
NHLF

Sequenced DNA Library

library_name
GSM646487: NHLF_H3K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
16183897
Reads aligned (%)
73.8
Duplicates removed (%)
9.3
Number of peaks
26595 (qval < 1E-05)

hg19

Number of total reads
16183897
Reads aligned (%)
73.4
Duplicates removed (%)
9.8
Number of peaks
26599 (qval < 1E-05)

Base call quality data from DBCLS SRA