SRX038676
GSM646486: NHLF H3K4me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
NHLF
Tissue
lung
Lineage
endoderm
Description
lung fibroblasts

Attributes by original data submitter

Sample

source_name
cultured NHLF cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
NHLF

Sequenced DNA Library

library_name
GSM646486: NHLF_H3K4me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26489435
Reads aligned (%)
85.5
Duplicates removed (%)
6.2
Number of peaks
11998 (qval < 1E-05)

hg19

Number of total reads
26489435
Reads aligned (%)
84.6
Duplicates removed (%)
7.8
Number of peaks
11983 (qval < 1E-05)

Base call quality data from DBCLS SRA