SRX038664
GSM646474: NHLF CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
NHLF
Tissue
lung
Lineage
endoderm
Description
lung fibroblasts

Attributes by original data submitter

Sample

source_name
cultured NHLF cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
NHLF

Sequenced DNA Library

library_name
GSM646474: NHLF_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18984036
Reads aligned (%)
55.8
Duplicates removed (%)
53.8
Number of peaks
18511 (qval < 1E-05)

hg19

Number of total reads
18984036
Reads aligned (%)
55.4
Duplicates removed (%)
54.7
Number of peaks
18439 (qval < 1E-05)

Base call quality data from DBCLS SRA