SRX038657
GSM646467: NHEK H3K4me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
cultured NHEK cells
chip antibody
H3K4me3
antibody manufacturer
Millipore
antibody catalog number
07-473
cell line
NHEK

Sequenced DNA Library

library_name
GSM646467: NHEK_H3K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20855214
Reads aligned (%)
53.7
Duplicates removed (%)
5.0
Number of peaks
27025 (qval < 1E-05)

hg19

Number of total reads
20855214
Reads aligned (%)
53.3
Duplicates removed (%)
5.6
Number of peaks
27046 (qval < 1E-05)

Base call quality data from DBCLS SRA