SRX038652
GSM646462: NHEK H3K4me1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
cultured NHEK cells
chip antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
cell line
NHEK

Sequenced DNA Library

library_name
GSM646462: NHEK_H3K4me1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15714789
Reads aligned (%)
74.3
Duplicates removed (%)
5.0
Number of peaks
13773 (qval < 1E-05)

hg19

Number of total reads
15714789
Reads aligned (%)
74.1
Duplicates removed (%)
5.2
Number of peaks
13769 (qval < 1E-05)

Base call quality data from DBCLS SRA